Bug 396537 – app-misc/lirc: compiler driver is invoked with raw linker flags (LDFLAGS): Commenting out LDFLAGS in /usr/portage/profiles/arch/amd64/make.defaults fixes the problem:
# 64bit specific settings.
CFLAGS_amd64="-m64"
#LDFLAGS_amd64="-m elf_x86_64"
CHOST_amd64="x86_64-pc-linux-gnu"
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What a mess...
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